Gene Score gda Association Type Type Original DB Sentence supporting the association PMID PMID Year
Entrez Id: 340602
Gene Symbol: EZHIP
EZHIP
0.030 AlteredExpression disease BEFREE Recently, we reported CXorf67 overexpression as hallmark of PFA ependymoma and showed that CXorf67 can interact with EZH2 thereby inhibiting polycomb repressive complex 2 (PRC2), but the mechanism of action remained unclear. 30923826 2019
Entrez Id: 10046
Gene Symbol: MAMLD1
MAMLD1
0.030 Biomarker disease BEFREE Together, these results demonstrate that the YAP1-MAMLD1 fusion functions as an oncogenic driver of ependymoma through recruitment of TEADs and NFIs, indicating a rationale for preclinical studies to block the interaction between YAP1 fusions and NFI and TEAD transcription factors. 31477715 2019
Entrez Id: 4613
Gene Symbol: MYCN
MYCN
0.030 GeneticVariation disease BEFREE Taking these findings into account, we suggest to designate this molecular subgroup spinal ependymoma with MYCN amplification, SP-EPN-MYCN. 31414211 2019
Entrez Id: 2260
Gene Symbol: FGFR1
FGFR1
0.030 AlteredExpression disease BEFREE Among gliomas, FGFR3 fusions occur in IDH wild-type diffuse gliomas leading to high FGFR3 protein expression and both, FGFR3 and FGFR1, show elevated expression in aggressive ependymomas. 31660579 2019
Entrez Id: 10046
Gene Symbol: MAMLD1
MAMLD1
0.030 GeneticVariation disease BEFREE Ependymoma with YAP1-MAMLD1 fusion is a rare, recently described supratentorial neoplasm of childhood, with few cases published so far. 30246434 2019
Entrez Id: 4613
Gene Symbol: MYCN
MYCN
0.030 Biomarker disease BEFREE We found MYCN amplification reported in 2 other ependymomas, both anaplastic and arising in the spinal cord of adult females (Brain Pathol 2001;11:133-43). 31373367 2019
Entrez Id: 4851
Gene Symbol: NOTCH1
NOTCH1
0.030 AlteredExpression disease BEFREE NOTCH1 expression in ST-EPN was correlated with the CSCs markers VEGFA and L1CAM overexpression and JAG1 expression was correlated with the CCND1 and CDK6 overexpression. 31308481 2019
Entrez Id: 2260
Gene Symbol: FGFR1
FGFR1
0.030 GeneticVariation disease BEFREE FGFR1 was mutated in 3/75 grade II versus 2/7 grade III GG (p = 0.05), 1/7 DNET, 1/100 EP grade II. 31673897 2019
Entrez Id: 340602
Gene Symbol: EZHIP
EZHIP
0.030 PosttranslationalModification disease BEFREE Posterior fossa type A (PFA) ependymomas exhibit very low H3K27 methylation and express high levels of EZHIP (Enhancer of Zeste Homologs Inhibitory Protein, also termed CXORF67). 31086175 2019
Entrez Id: 3897
Gene Symbol: L1CAM
L1CAM
0.030 Biomarker disease BEFREE Immunohistochemistry using both p65/RELA and L1CAM antibodies is valuable for ST-EP-RELA diagnosis: the negativity with both antibodies consistently predicts the absence of RELA fusions, whereas verification of fusion transcripts by molecular analyses is warranted only in single-positive or double-positive staining cases. 29266023 2019
Entrez Id: 3897
Gene Symbol: L1CAM
L1CAM
0.030 AlteredExpression disease BEFREE NOTCH1 expression in ST-EPN was correlated with the CSCs markers VEGFA and L1CAM overexpression and JAG1 expression was correlated with the CCND1 and CDK6 overexpression. 31308481 2019
Entrez Id: 960
Gene Symbol: CD44
CD44
0.020 Biomarker disease BEFREE In addition, 6 hub genes [cyclin dependent kinase 1, CD44 molecule (Indian blood group) (<i>CD44</i>), proliferating cell nuclear antigen (<i>PCNA</i>), <i>MYC</i>, synaptotagmin 1 (<i>SYT1</i>) and kinesin family member 4A] and 6 crucial miRNAs [<i>homo sapiens (hsa)-miR-34a-5p, hsa-miR-449a, hsa-miR-106a-5p, hsa-miR-124-3p, hsa-miR-128-3p</i> and <i>hsa-miR-330-3p</i>] were identified as biomarkers and potential therapeutic targets for EPN. 31788082 2019
Entrez Id: 29126
Gene Symbol: CD274
CD274
0.020 AlteredExpression disease BEFREE Increased CTL densities and upregulation of PD-L1 in ST-RELA ependymomas suggests potential candidature for immunotherapy. 31388782 2019
Entrez Id: 2261
Gene Symbol: FGFR3
FGFR3
0.020 AlteredExpression disease BEFREE Among gliomas, FGFR3 fusions occur in IDH wild-type diffuse gliomas leading to high FGFR3 protein expression and both, FGFR3 and FGFR1, show elevated expression in aggressive ependymomas. 31660579 2019
Entrez Id: 29126
Gene Symbol: CD274
CD274
0.020 AlteredExpression disease BEFREE Immune cell subsets and programmed death ligand 1 (PD-L1) expression were measured in 178 classical ependymoma cases by immunohistochemistry using monoclonal antibodies that recognized tumor-infiltrating lymphocyte subsets (TILs; CD3, CD4, CD8, FOXP3, and CD20), tumor-associated macrophages (TAMs; CD68, CD163, AIF1), indoleamine 2,3-dioxygenase (IDO)+ cells and PD-L1-expressing tumor cells. 30483834 2019
Entrez Id: 595
Gene Symbol: CCND1
CCND1
0.020 AlteredExpression disease BEFREE NOTCH1 expression in ST-EPN was correlated with the CSCs markers VEGFA and L1CAM overexpression and JAG1 expression was correlated with the CCND1 and CDK6 overexpression. 31308481 2019
Entrez Id: 5243
Gene Symbol: ABCB1
ABCB1
0.020 Biomarker disease BEFREE ABCB1 is a predictive marker of chemotherapy response in ependymoma patients and vardenafil, currently used to treat paediatric pulmonary hypertension in children, could be repurposed to reduce chemoresistance, migration and invasion in paediatric ependymoma patients at non-toxic concentrations. 31311995 2019
Entrez Id: 546
Gene Symbol: ATRX
ATRX
0.020 Biomarker disease BEFREE NF2 and ATRX gene copy number losses on a case of ovarian ependymoma. 29944970 2019
Entrez Id: 7015
Gene Symbol: TERT
TERT
0.010 GeneticVariation disease BEFREE Telomerase-reverse transcriptase gene promoter (TERTp) mutation has been identified in a subset of ependymomas with aggressive behavior. 31330336 2019
Entrez Id: 442891
Gene Symbol: MIR135B
MIR135B
0.010 AlteredExpression disease BEFREE The most specific were miR-10a and miR-29a low expression in LGG non-responders, miR-135a and miR-146b over-expression in ependymoma non-responders, and miR-135b overexpression in medulloblastoma non-responders. 29658967 2019
Entrez Id: 554213
Gene Symbol: MIR449A
MIR449A
0.010 Biomarker disease BEFREE In addition, 6 hub genes [cyclin dependent kinase 1, CD44 molecule (Indian blood group) (<i>CD44</i>), proliferating cell nuclear antigen (<i>PCNA</i>), <i>MYC</i>, synaptotagmin 1 (<i>SYT1</i>) and kinesin family member 4A] and 6 crucial miRNAs [<i>homo sapiens (hsa)-miR-34a-5p, hsa-miR-449a, hsa-miR-106a-5p, hsa-miR-124-3p, hsa-miR-128-3p</i> and <i>hsa-miR-330-3p</i>] were identified as biomarkers and potential therapeutic targets for EPN. 31788082 2019
Entrez Id: 100271722
Gene Symbol: LINC00899
LINC00899
0.010 AlteredExpression disease BEFREE LINC00899 expression increased in spinal ependymoma tissues whereas RBL2 expression decreased. 31432742 2019
Entrez Id: 407042
Gene Symbol: MIR34C
MIR34C
0.010 AlteredExpression disease BEFREE Low-expression of miR-221, miR-9, and miR-181c/d and over-expression of miR-101, miR-222, miR-139, miR-1827, and miR-34c was found in medulloblastoma; low expression of miR-10a and over-expression of miR-10b and miR-29a in ependymoma; low expression of miR-26a and overexpression of miR-19a/b, miR-24, miR-27a, miR- 584, and miR-527 in low-grade glioma. 29658967 2019
Entrez Id: 182
Gene Symbol: JAG1
JAG1
0.010 AlteredExpression disease BEFREE NOTCH1 expression in ST-EPN was correlated with the CSCs markers VEGFA and L1CAM overexpression and JAG1 expression was correlated with the CCND1 and CDK6 overexpression. 31308481 2019
Entrez Id: 6622
Gene Symbol: SNCA
SNCA
0.010 Biomarker disease BEFREE A second resection was performed for the mass, which pathological examination revealed an ependymoma with focal anaplasia and additional unusual features including an infiltrative growth pattern and intermixed α-synuclein positivity with electron microscopy finding of LB-like inclusions. 30409527 2019